# 10.0 Requesting an Interactive Node ## 10.1 Introduction This guide provides step-by-step instructions on how to request an interactive node on the Sun Grid Engine (SGE) cluster. ## 10.1.1 Prerequisites - Access to the SGE cluster. - A valid user account on the cluster. ## 10.1.2 Steps to Request an Interactive Node 1. **Open a Terminal** - Access your terminal application on your local machine or connect to the cluster via SSH. 2. **Load the Required Modules (if necessary)** - Depending on your environment, you may need to load specific modules. Use the following command: ```bash module load ``` 3. **Request an Interactive Session** - Use the `qlogin` command with the `-pe` option to request an interactive session. You can specify the resources you need (e.g., number of slots, time limit) as follows: ```bash qlogin -pe mpi 64 -l mem_free=4G -l h=hostname ``` - Replace `4G` with the desired memory and `hostname` with the specific node you want to use (example compute-0-0). 4. **Specify Additional Options (Optional)** - You can add more options to customize your request, such as: - `-q queue_name`: Specify the queue. - `-l h_rt=01:00:00`: Set the maximum run time (1 hour in this example). 5. **Connect to the Interactive Node** - Once your request is accepted, you will be connected to the interactive node, and you can start executing your commands. 6. **End the Interactive Session** - To exit the interactive session, simply type: ```bash exit ``` ## 10.2 Graphic Based Applications 1. **Open a Terminal** - Access your terminal application on your local machine. 2. **Connect to the Cluster with X11 Forwarding** - Use the `ssh` command with the `-X` option to enable X11 forwarding. Replace `username` and `cluster_address` with your actual username and the address of the cluster (e.g. quevedo.eaifr.org): ```bash ssh -X username@quevedo.eaifr.org ``` 3. **Load the Required Modules (if necessary)** - If VMD is not installed by default, load the necessary module: ```bash module load vmd ``` 4. **Launch VMD** - Start VMD by typing the following command: ```bash vmd ``` 5. **Use VMD for Visualization** - Once VMD is open, you can load your molecular structures and begin your visualization tasks. 6. **End the VMD Session** - To exit VMD, simply close the application window or type: ```bash exit ``` ## 10.3 Further Information Login to CINECA's HPC Infrastructure can be configured to ease access. See :doc:`Section 11 ` For further assistance, please refer to the cluster documentation or contact the ICTP-EAIFR research support team.